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Databases

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Barley database from UK Crop Net
http://ukcrop.net/perl/ace/search/BarleyDB

BrachyBase displays the JGI 4X draft genome assemblies with FGENESH gene predictions, rice cDNAs, grass transcript assemblies, and grass ESTs aligned
http://www.brachybase.org/

The Cereal Pathogen Resistance Allele Database (CPRAD) catalogues information on the pathogen resistance alleles reported to be found in genotypes of barley and in future wheat and oats. It is fully searchable on a range of criteria and initial query results are displayed in a table.
http://cprad.scri.ac.uk/

FoggDB is a database funded by the BBSRC UK CropNet project, for the storage of genetic mapping data pertaining to the temperate forage grasses, Lolium Perenne, Lolium multiflorum and Festuca Pratensis.
http://ukcrop.net/perl/ace/search/FoggDB

The MOsDB is a resource for publicly available sequences of the rice (Oryza sativa L.) genome. Rice is an experimental model for the cereal crops research and an agriculturally important plant, providing food for more than half of the world population.
http://mips.gsf.de/proj/plant/jsf/rice/index.jsp

Comparative Genomics using the model grass Brachipodium distachyon
http://www.modelcrop.org/

PHI-base is a web-accessible database that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is therfore an invaluable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention. In collaboration with the FRAC team, PHI-base also includes antifungal compounds and their target genes. Each entry in PHI-base is curated by domain experts and is supported by strong experimental evidence (gene disruption experiments, STM etc), as well as literature references in which the original experiments are described. Each gene in PHI-base is presented with its nucleotide and deduced amino acid sequence, as well as a detailed description of the predicted protein\'s function during the host infection process.
http://www.phi-base.org

PLEXdb (Plant Expression Database) is a unified public resource for gene expression for plants and plant pathogens. PLEXdb serves as a bridge to integrate new and rapidly expanding gene expression profile data sets with traditional structural genomics and phenotypic data. The integrated tools of PLEXdb allow investigators to use commonalities in plant biology for a comparative approach to functional genomics through use of large-scale expression profiling data sets.
http://www.plexdb.org/index.php

Transcription factors (TFs) regulate gene expression by interacting with promoters of their target genes and are classified into families based on their DNA-binding domains. Genes coding for TFs have been identified in the sequences of model plant genomes...
http://wwwappli.nantes.inra.fr:8180/wDBFT/

The database on this site now contains over 26K quality and vector trimmed single pass sequences (ESTs) from these different wheat libraries.
http://www.cerealsdb.uk.net/database.htm




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